Loop Networks

Loops in LeafAs a student at Christ’s College in Cambridge (1827-1831), Charles Darwin was reported given his first microscope by one of his insect-collecting friends, John Maurice Herbert. Today, scientists use satellite nanoscopes to study intracellular molecular dynamics and signaling networks between cells.

While loop networks have long been used in architecture, Uri Alon of the Weizmann Institute of Science is credited with discovering them in biology.

In 2002, Alon published a by entitled “Network motifs in the transcriptional regulation network of Escherichia coli” in the April edition of the journal Nature Genetics. These newly recognized loop networks, however, challenge the theory of evolution.

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Geographical Isolation

Bird Species Geographical isolation is a driving force of speciation, hypothesized by Charles Darwin in The Origin of Species by means of natural selection. The emergence of new species is “chiefly grounded on the laws of geographical distribution, that forms now perfectly distinct [species] have descended from a single parent-form,” Darwin argued.

The University of California Berkeley (UCB) Evolution 101 hosts the website page “Causes of Speciation.” Their argument for the theory is logical:

“Scientists think that geographic isolation is a common way for the process of speciation to begin: rivers change course, mountains rise, continents drift, organisms migrate, and what was once a continuous population is divided into two or more smaller populations.”

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Darwin’s Frog Faces Extinction

Darwin's FrogIn December 1834, during the five-year voyage of the HMS Beagle, Charles Darwin described the colorings of an unusual frog on the temperate forest Island of Lemuy, Chiloe Archipelago, in his Beagle field notebook. Named in his honor, Rhinoderma darwinii, Darwin’s frog now faces extinction, not evolution.

The only known sister Rhinoderma species, Rhinoderma rufum, was discovered by French zoologist André Marie Constant Duméril (1774 – 1860) in Argentina. In 2004, the International Union of Conservation of Nature (IUCN) listed R. rufum as “critically endangered” and R. darwinii as “vulnerable.”

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Evolutionary Tree of Life

Tree of LifeThe history of the evolutionary tree of life, from Greek philosophers to twenty-first-century scientists, gives insights into the theory’s origin and transition through Western civilization.

While approaches have been diverse, elements progressing into increasing complexity over time are a constant theme.

Porphyry (234–305 BC), a third-century Greek philosopher, composed the first known tree of life in his work entitled Isagoge while living in Sicily. Isagoge is an “Introduction” Porphyry edited into Aristotle‘s (384–322 BC) text known as Categories.

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Out-of-Asia Dilemma

Archicebus_achilles Charles Darwin started the debate over where humans originated. In the 19th century, most evolution scientists believed humans originated in Asia–the Out-of-Asia model. In the 6th Edition of The Origin of Species (1872), while Darwin mentions “humans” ten times, he never discusses the origin of humans.

Darwin studied African apes for the 1st Edition of The Descent of Man (1871). In the section entitled “On the Birthplace and Antiquity of Man,” Darwin argued –

“It is somewhat more probable that our early progenitors lived on the African continent than elsewhere.”

Darwin started evolution’s Out-of-Africa vs. Out-of-Asia dilemma.

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